Sciencemadness Discussion Board

Good news from Dr. Nichols: 1-Aminomethylbenzocycloalkanes

Sandmeyer - 20-10-2006 at 16:38

1-Aminomethylbenzocycloalkanes: Conformationally Restricted Hallucinogenic Phenethylamine Analogues as Functionally Selective 5-HT2A Receptor Agonists1

McLean, T. H.; Parrish, J. C.; Braden, M. R.; Marona-Lewicka, D.; Gallardo-Godoy, A.; Nichols, D. E.

J. Med. Chem.; (Article); 2006; 49(19); 5794-5803. DOI: 10.1021/jm060656o

http://rapidshare.com/files/79842/New_Nichols.pdf.html

The route to the compound 2 seems rather tedious. To get the key precursor, I was having in mind that one can take allylbromide, react with potassium phthalimide to get the masked allylamine and let this undergo a [2+2] photoaddition with benzoquinone under standard conditions, for conveniance... Ideas?

Anyways, tnx to such a cute girl for showing me the paper... :D


[Edited on 22-10-2006 by Sandmeyer]

Nicodem - 21-10-2006 at 04:01

Do you happen to have any useful references for 2+2 photoadditions where a terminal non-conjugated alkene is photocyclisized with p-benzoquinone?
It simply sounds too simple to be true, so I'm very skeptical about it.

Sergei_Eisenstein - 21-10-2006 at 05:01

In theory it' possible, but I'm more sceptical about "standard conditions". Reaction conditions for pericyclic reactions vary widely, from -50°C to 280°C and from 1 to 100 atm.
Things that should be considered: are you sure the HOMO/LUMO energy difference is large enough to drive the reaction into the desired direction (the olefin is not very activated, as Nicodem pointed out)? You may instead end up with Paterno-Büchi side-products or photodimerized allylamine (gives a symmetrical 1,3-disubstituted cyclobutane). Also, if you obtain the desired intermediate, how easy (how many reaction) will it be to have the aromaticity of the new benzoquinone derivative restored? It's not as simple as the reduction of benzoquinone to hydroquinone (as far as my knowledge reaches).

Sandmeyer - 21-10-2006 at 13:55

Hi :)

Thanks for the input... Sorry but I don't have p-benzoquinone-specific references, I posted what came to mind while looking at the formulas :o. However, 3-methyl-2-cyclohexenone reacts smoothly with ethylene[1] as does plain cyclohexenone (90% yield), undesired Paterno-Büchi heterocycle is formed only in 3% yield[2]. Another procedure[3] uses electron-rich olefin (note also interesting fragmentation). I did consider acroylnitrile, but wouldn't the use of isolated alkene minimize side-reactions (dimerizations), since in that case only enone can be light-excited? I see no frontier orbital obstacle to have isolated olefin as one of the components.

Anyhow, another option is to go via aryne corresponding to 2-bromo-p-dimethoxybenzene. Once generated, this species

a.) may be able to undergo a [2+2] with, N,N-dibenzylallylamine* or N-allylphtalimide** to give protected amine directly

b.) may for sure undergo a [2+2] with 1,1-dimethoxyethylene, ultimately giving cyclobutanone[4]. Treatment with TosMic yields nitrile. But b.) involves much more work...

*: If BuLi is used since it will cleave the phthalimide
**: If LDA is used since it dosen't attack phthalimide

Nichols et al. use 3 different starting materials in Scheme 1, 2, 3, more efficiently one could go from indanones to make both five-membered (IMO, TosMic is preferable for nitrile introduction) and four-membered carbocycles. The ring contraction to the latter can be done in two ways, in order of conveniance:

(1) Lead(IV) acetate method. 1,2-dihydro-cyclobutabenzene-1-carboxylic acid has thus been made directly from 1-indanone in 75 % yield.[5]

(2) α-oximation of the indanone, α-diazo ketone and photo-Wolff rearrangement of it to carboxylic acid.[6]

Resulting carboxylic acids can in turn can be amidated and reduced with NaBH4/I2.

Quote:
Also, if you obtain the desired intermediate, how easy (how many reaction) will it be to have the aromaticity of the new benzoquinone derivative restored? It's not as simple as the reduction of benzoquinone to hydroquinone (as far as my knowledge reaches).


It's highly likely that α,β-unsaturation of the formed intermediate into benzoquinone can be done in one step under very mild conditions, but I'm unable to refer to that paper for a personal reason.


References:

[1]: http://www.orgsyn.org/orgsyn/prep.asp?prep=cv7p0315

[2]:
Photochemical synthesis at low temperatures. III. Ready synthesis of bicyclo[4.2.0]octan-2-ones from cyclohexenones and ethylene

Owsley, Dennis C.; Bloomfield, Jordan J. Journal of the Chemical Society [Section] C: Organic (1971), (20), 3445-7.

Abstract: Photochem. [2+2] cycloaddns. of CH2:CH2 to 2-cyclohexen-1-one and 3,5,5-trimethyl-2-cyclohexen-1-one at -70° in CH2Cl2 gave 90% bicyclo[4.2.0]octan-2-one and 85% 4,4,6-trimethylbicyclo[4.2.0]octan-2-one, resp. Under the same conditions, or in Me2CO at -70°, H-C-tripplebond-C-H did not undergo a [2+2] cycloaddn.

[3]: http://www.orgsyn.org/orgsyn/prep.asp?prep=cv6p1024

[4]:
An efficient and remarkably regioselective synthesis of benzocyclobutenones from benzynes and 1,1-dimethoxyethylene

Robert V. Stevens, Gregory S. Bisacchi.;
J. Org. Chem.; 1982; 47(12); 2393-2396.

Link: http://rapidshare.com/files/170498/Aryne_benzoycyclobutenone...

[5]: Nongrum, F.M.; Myrboh, B.; Synthesis; 9; 1987; 845-846.

Link: http://rapidshare.com/files/172865/s-1987-28099.pdf.html

[6]: http://www.orgsyn.org/orgsyn/prep.asp?prep=cv6p0840

[Edited on 22-10-2006 by Sandmeyer]

Sergei_Eisenstein - 21-10-2006 at 15:58

Another question that comes up to mind concerns the stability of cyclobutabenzene derivatives (I have no practical experience with this type of substances). They are also used as precursors for o-quinodimethanes, and as such are a valuable type of compounds for pericyclic reactions. To do so, the cyclobutabenzene is subjected to an electrocyclic ring opening. Some substances require heating, others nothing more then room temperature. The main problem here is the stability of the o-quinodimethane: it is highly reactive. If there are no reaction partners, there will simply be an equilibrium between the cyclobutabenzene and the o-quinodimethane, but if there are, I suspect it will become a mess. The o-quinodimethane will happily react Diels-Alder style. Among others, I see a benzoquinone offering itself for reaction.
I haven't read the complete article yet, but perhaps you can also ask yourself whether the substance analyzed after synthesis, the compound put on the receptors, and the dust that one day will inevitably will be subjected to gastric inspection by the hippies are the same compound.
Perhaps you should just try, and if it doesn't work out as you hoped, just come back and read what might have gone wrong ;)

JohnWW - 21-10-2006 at 16:23

Quote:
Originally posted by Sandmeyer 1-Aminomethylbenzocycloalkanes: Conformationally Restricted Hallucinogenic Phenethylamine Analogues as Functionally Selective 5-HT2A Receptor Agonists1 McLean, T. H.; Parrish, J. C.; Braden, M. R.; Marona-Lewicka, D.; Gallardo-Godoy, A.; Nichols, D. E. J. Med. Chem.; (Article); 2006; 49 (19); 5794-5803. DOI: 10.1021/jm060656o
http://rapidshare.com/files/79842/New_Nichols.pdf.html
The route to the compound that is of LSD's potency seems rather tedious. To get the key precursor, I was having in mind that one can take allylbromide, react with potassium phthalimide to get the masked allylamine and let this undergo a [2+2] photoaddition with benzoquinone under standard conditions, for conveniance... Ideas?

This file has been deleted due to alleged inactivity; someone please re-upload it.

solo - 21-10-2006 at 17:38

Reference Information


1-Aminomethylbenzocycloalkanes: Conformationally Restricted Hallucinogenic Phenethylamine Analogues as Functionally Selective 5-HT2A Receptor Agonists1
McLean, T. H.; Parrish, J. C.; Braden, M. R.; Marona-Lewicka, D.; Gallardo-Godoy, A.; Nichols, D. E.
J. Med. Chem.; (Article); 2006; 49(19); 5794-5803.


Abstract
A series of conformationally restricted analogues of the hallucinogenic phenethylamine 1 (2,5-dimethoxy- 4-bromophenethylamine, 2C-B) was synthesized to test several hypotheses concerning the bioactive conformation of phenethylamine ligands upon binding to the 5-HT2A receptor. These benzocycloalkane analogues were assayed for their receptor binding affinity and ability to activate downstream signaling pathways, and one exceptional compound was selected for testing in an in vivo drug discrimination model of hallucinogenesis. All compounds were examined in silico by virtual docking into a homology model of the 5-HT2A receptor. On the basis of these docking experiments, it was predicted that the R enantiomer of benzocyclobutene analogue 2 would be the most potent. Subsequent chemical resolution and X-ray crystallography confirmed this prediction, as (R)-2 proved to be equipotent to LSD in rats trained to
discriminate LSD from saline. Thus, we propose that the conformation of 2 mimics the active binding conformation of the more flexible phenethylamine type hallucinogens. In addition, (R)-2 is one of the most potent and selective compounds yet discovered in the in vivo drug discrimination assay. Further, 2 was found to be a functionally selective agonist at the 5-HT2A receptor, having 65-fold greater potency in stimulating phosphoinositide turnover than in producing arachidonic acid release. If hallucinogenic effects are correlated with arachidonic acid production, such functionally selective 5-HT2A receptor agonists may lack the intoxicating properties of hallucinogens such as LSD.

Attachment: New_Nichols.pdf (194kB)
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Sergei_Eisenstein - 22-10-2006 at 00:17

Quote:
If there are no reaction partners, there will simply be an equilibrium between the cyclobutabenzene and the o-quinodimethane, but if there are, I suspect it will become a mess. The o-quinodimethane will happily react Diels-Alder style. Among others, I see a benzoquinone offering itself for reaction.


I was wrong about benzoquinone being a possible reaction partner, since I assume you do the aromatization in at least a second step. Nevertheless, the o-quinodimethane intermediate remains a theoretical possibility.

Nicodem - 22-10-2006 at 00:42

I come to like this idea of photocycloaddition (BTW, great idea, Sendmayer!). However I don't have Beilstein/SciFinder access during the weekend. The only references regarding [2+2] photoadditions on p-benzoquinone I was able to find using keywords are all at the RSC publisher that is currently offline due to maintenance.
The HOMO/LUMO energy difference is satisfactory even though the N-allyl-phthalimide is not electron rich, but the Paterno-Büchi side reaction is still possible (I think saw preparative examples on p-benzoquinone as well, but more on this when I will be able to get the papers).

As Sergei noted there might be a problem with the stability of the resulting cyclobutabenzene. Would they survive methylation and deprotection with hydrazine? From Nichols we know they survive BH3 and Br2, so they are not that very sensitive, but here we would have a phenolic form first.
Synthesizing an analogous 5-HT2A agonist from p-naphtaquoinone would allow for skipping the bromination and the synthesis would require only 3 steps (with the possibility that the photoaddition works better on naphtoquinones?).

Quote:
Originally posted by Sandmeyer
It's highly likely that α,β-unsaturation of the formed intermediate into benzoquinone can be done in one step under very mild conditions...

I think you and Sergei both neglected that the resulting intermediate of the [2+2] photocycloaddition tautomerizes to the already aromatic compound (that's the beauty of working with quinones – see scheme). So there is no need to do anything else to it than simply methylate with dimethylsulphate.


caribou - 22-10-2006 at 02:59

There is at least one more route to 1-(aminomethyl)benzocyclobutenes, i. e. by intramolecular nucleophilic substitution in 3-(2-bromophenyl)propanenitrile anions (generated from the nitriles by deprotonation with LDA or sodium amide).
EP43194.


The method was applied in the synthesis of methoxy-substituted 1-(aminomethyl)benzocyclobutenes which were O-demethylated and evaluated as adrenergic agonists.

The same authors obtained 1-(aminomethyl)indanes, tetralines and phthalans for the same purpose.

J. Med. Chem. 1985, 28, 1398;
J. Med. Chem. 1986, 29, 463;
J. Med. Chem. 1987, 30, 178.


1-(Aminomethyl)-5,6-dimethoxyindane is a known compound. It was obtained from 5,6-dimethoxy-1-indanone by 2 methods:
1) a) TosMIC/t-BuOK; b) LAH and
2) a)BrCH2CO2Et/Zn; b) H2 - Pd/C; c) N2H4; d) HNO2; Curtius rearrangement; hydrolysis.

Org. Prep. Proc. Int. 1992, 24, 45;
Bol. Soc. Chil. Quím. 2002, 47(1), 25-31.

The articles mentioned are in the attached archive.

Attachment: constrained_PEAs.zip (402kB)
This file has been downloaded 611 times


Sandmeyer - 22-10-2006 at 04:27

Hi Caribou. I didn't see the advantage over Nichol's route since one has to make these propanenitriles, quite a formidable task.

Anyways, someone please get this paper:

Oda, Masaji; Kanao, Yoshinori; Chem. Lett.; 1981; 37-38.

bicyclo[4.2.0]oct-3-ene-2,5-dione (the cycloadduct between benzoquinone and ethylene) --THF/RoomTemp--> 1,2-dihydrocyclobutabenzene-3,6-diol (beloved hydroquinone) Yield: 84%

In SMILE code:

O=C(C=C1)C2C(CC2)C1=O ----> OC1=C2C(CC2)=C(O)C=C1

[Edited on 22-10-2006 by Sandmeyer]

caribou - 22-10-2006 at 05:05

Quote:
Oda, Masaji; Kanao, Yoshinori; Chem. Lett.; 1981; 37-38.

It must be freely accessible:
PDF, 211 KBytes, 2 pages.

Nicodem - 22-10-2006 at 07:35

That Chem. Lett. paper is really cool, though it surprises me that the tautomerization to the aromatic form needs to be catalyzed by DBU. I was convinced it occurs spontaneously in the slightest presence of any acid or base (I was wrong). Someone with full Tetrahedron letters access please upload the reference 4.

Caribou, thanks for the interesting papers. That nitrile ring closure is a viable option, but I have to agree with Sandmeyer on this - it is too much work. Nevertheless, here is another paper relevant for such a route, probably the oldest one:

J. F. Bunnett and Joseph A. Skorcz. Homocyclic Ring Closures via Benzyne Intermediates. A New Synthesis of 1-Substituted Benzocyclobutenes. Journal of Organic Chemistry, 1962, 27(11), 3836 – 3843.

Attachment: Homocyclic Ring Closures via Benzyne Intermediates.pdf (916kB)
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Ullmann - 22-10-2006 at 08:40

What is the problem with the same route than the authors but generating the aryne from bromo-dimethoxybenzene and NaNH2 or LDA? It is much easier to get this precursor than the anthranilic acid they use. Their route is viable and short only three steps from 1,4-dimethoxybenzene and they are easy steps, if you can get the acrylonitrile and strong base this is the best way to do it IMHO.

Anyway altough i didnt found a ref with generation of a beta-amino cyclobutane compound from benzoquinone i have found a ref about the alcohol analogue protected by an acetate group, starting from allyl-acetate.

It is online from the same site than above, check : chem. Lett. 1986 (12) 2113-16

Nicodem - 22-10-2006 at 09:29

That paper (from the same authors) does not use p-benzoquinone but 5,6-dichloro-2-cyclohexene-1,4-dione. Nevertheless, this would be just perfect if there is some simple way to prepare this dichloro, or preferentially dibromo, compound (Could it be as simple as a halogenation of p-benzoquinone under conditions where no HX elimination or tautomerization occurs? These stupid Letters, they never have the needed procedures!).

Unfortunately Nichols' method limits the formation of the benzyne intermediate to neutral media since there is no way to prevent acrylonitrile degradation/polymerisation in NaNH2/NH3. As for using the benzyne method with substrates such as N-allyl-phthalimide or N,N-dibenzyl-allylamine, I'm not sure whether it would work. I'm not familiar with benzyne chemistry involving [2+2] cycloaddtions. Anyway, here is paper on the usage of 2-bromo-1,4-dimethoxybenzene as a benzyne source for further reactions (in case someone finds it inspiring for anything else but a banal 2-(2,5-dimethoxyphenyl)acetonitrile synthesis):

Yu Xin Han, Misa V. Jovanovic, Edward R. Biehl. Reaction of 2-bromo-1,4-dimethoxybenzene with various nucleophiles via aryne reaction. J. Org. Chem., 1985, 50(8), 1334-1337.

[Edited on 22-10-2006 by Nicodem]

Attachment: Reaction of 2-Bromo-1,4-dimethoxybenzene with Various Nucleophiles via Aryne Reaction.pdf (414kB)
This file has been downloaded 881 times


solo - 22-10-2006 at 09:34

Reference Information Requested





Preferential photochemical cyclobutane-ring formations of 2-cyclohexene-1,4-dione with olefins and acetylenes. A simple and general synthesis of bicyclo[4.2.0]octane-2,5-diones
Masaji Oda, , Hidetoshi Oikawa, Yoshinori Kanao and Akira Yamamuro
Tetrahedron Letters, Volume 19, Issue 49, 1978, Pages 4905-4908

Attachment: Preferential Photochemical cyclobutane ring formation.pdf (258kB)
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Sandmeyer - 22-10-2006 at 09:35

Check out this wonderful paper, from the same japanese group:

http://www.journalarchive.jst.go.jp/jnlpdf.php?cdjournal=cl1...

It would be fucking fantastic if one could go from trans-dibromo derivative with the same results.

Ullman, I pointed out refs for that aryne route couple of posts ago, but I doubt one could use acrylonitrile under conditions required to generate aryne from bromoaryl.

Edit: I missed some of the above, sorry for redundance :(

[Edited on 22-10-2006 by Sandmeyer]

Sergei_Eisenstein - 22-10-2006 at 10:16

Quote:
It would be fucking fantastic if one could go from trans-dibromo derivative with the same results.


Reductive dehalogenations are widely described in the literature. If their procedure doesn't work, you may easily find a lot of alternatives.

Nicodem - 22-10-2006 at 13:23

Seems like the photocycloaddition does not work on p-benzoquinone or else the Japonese authors would have referred to it. So we are left to find a simple method for the synthesis of 5,6-dichloro- and 5,6-dibromo-2-cyclohexene-1,4-dione.

The synthesis of 2-cyclohexene-1,4-dione as published in Organic Syntheses is not attractive at all!
(Another relevant OrgSyn link is: tert-Butylcyanoketene – I wander if the first step could be used on plain p-benzoquinone? That would be a winner!)

There can exist the possibility that p-naphtoquinone is on the edge of applicability in this photochemical method, so it would be worth to consider this option when doing literature research.

Quote:
Originally posted by Sandmeyer

Anyhow, another option is to go via aryne corresponding to 2-bromo-p-dimethoxybenzene. Once generated, this species

a.) may be able to undergo a [2+2] with, N,N-dibenzylallylamine* or N-allylphtalimide** to give protected amine directly

[....]

Ullman, I pointed out refs for that aryne route couple of posts ago, but I doubt one could use acrylonitrile under conditions required to generate aryne from bromoaryl.


Someone here around has a batch of 2-bromo-1,4-dimethoxybenzene to play with, so let's also research this route. In particularly, I would like to see references of [2+2] cycloadditions on benzyne formed from bromobenzenes. More particularly, on N-allyl-phthalimide or equivalents.

Ullmann - 22-10-2006 at 16:15

The dibromo-quinone is easily made by addition of bromine to a quinone solution in DCM at 0°C in a yield of ~70%. I think you have to start either from this enedione or the non-halogenated one you posted Nicodem otherwise there is a risk to form a bis-substituted diketone ie a bis-cyclobutane at both side of the benzoquinone.

You do not have to generate the aryne in liquid ammonia, solid NaNH2 in THF or even KOtBu IIRC are regularly used for such arynic formation from variously substituted halobenzenes. I do not think that the acrylonitrile is that unstable in such conditions, it may be possible. On the other hand, the only references i saw about 2+2 benzyne-alkene cycloaddition all involved preparation of the reactive aryne from the zwiterrionic diazonium salt. Another problem may be quenching of the aryne with the reactant ie the base to make the aniline or O-tert-butylphenol counterpart, hence i think best experimental protocol would involve slow addition of the base to a solution of the halo-benzene in excess acrylonitrile. I do not now the relative rate of the quenching nucleophilic reaction vs the 2+2 cycloaddition. At least with acetonitrile anion this species was more reactive than the NaNH2/NH3 they used but i cannot affirm than the rate of cycloaddition will be sufficient in our case. Better use an hindered base like LDA or KOtBu as a base IMHO...

Problem with the paper i gave the link is that you have a mixture of regioisomeric halodimethoxybenzenecyclobutanes at the end, which means chromatography separation of the products probably. Anyway it looks doable.

Sandmeyer - 23-10-2006 at 14:59

Quote:
Originally posted by Ullmann
Problem with the paper i gave the link is that you have a mixture of regioisomeric halodimethoxybenzenecyclobutanes at the end, which means chromatography separation of the products probably. Anyway it looks doable.


Nicols obtains a 5:1 excess of para regioisomer on bromination of "cyclobutane-2-CH". The japanese paper gives 3:1 ratio to our favour. Going from trans-dibromo derivative, the isomers could be separated at the final stage by simple recrystallisation, just like described by Nichols...

Drunkguy - 23-10-2006 at 15:43

This is kinda related to the Diels Alder reaction? I have experience doing those. [I have an "Oxford Primer" book on pericyclic reactions but I dont use it at all. I will happily scan it if anyone wants an e-copy].

4 + 2 cycloadditions are very common. However these 2 + 2 stuff is alot more exotic and I dont know about it OTTOMH.

You can make the precursor between phthalimide and allyl bromide, right?

I read a little about 2 + 2 cycloadditions last night, you are absolutely right that the 4n + 2 rule means that UV light is necessary. However it also appears that this reaction must be done at sub-zero temperatures.

In the reaction mechanism you showed 4 curly arrows. Just wondering if hv mediated process is free radical or if that was a typo.

[Edited on 23-10-2006 by Drunkguy]

[Edited on 24-10-2006 by Drunkguy]

[Edited on 24-10-2006 by Drunkguy]

Nicodem - 24-10-2006 at 11:59

More literature for more hope...

I found more papers from Iyoda et al on the phtocycloadditions on 5,6-dichloro-cyclohex-2-ene-1,4-dione. In the Synthesis (1986, 322-324) paper (attached) they used many simple non-conjugated alkenes. There is thus little doubt that N-allyl-phthalimide would work as well.

As for the synthesis of 5,6-dichloro-cyclohex-2-ene-1,4-dione and 5,6-dibromo-cyclohex-2-ene-1,4-dione, it is just as simple as Ullman said. Iyoda et al used the method from Can. J. Chem., 1966, 44, 2869-2872. Other synthesis references follow:
The resume of the general idea of what is expected to work based on analogous literature examples (modifications leading to the bromo version are applicable):



The idea of using ketene dimethyl acetal cycloaddition on arynes formed from bromoaromates, already described by Sandmeyer, was actually tried on 2-Bromo-1,4-dimethoxybenzene as well:

3,6-Dimethoxybenzocyclobutenone (5e). 1-Bromo-2,5-dimethoxybenzene (10 g, 0.046 mol), 8.1 g (0.092 mol) of ketene dimethyl acetal, and 3.6 g (0.092 mol) of sodium amide were refluxed in 20 ml of THF for 21 h. The crude ketal was isolated and hydrolyzed for 6 days at room temperature in 100 ml of 10% HCl with 20 ml of THF cosolvent. Chromatography on a 100 x 5 cm silica gel column with 25% ethyl acetate in hexanes and then recrystallization from hexanes gave 3.3 g (40%) of yellow product. Mp: 104°C (hexanes) ... + IR & NMR data...

Taken from (attached):
Lanny S. Liebeskind, Leonard J. Lescosky, and Charles M. McSwain, Jr. Synthesis of Substituted Benzocyclobutenediones J. Org. Chem., 1989, 54, 1435-1439.

Whether or not acrylonitrile is applicable and if it can be used in the presence of NaNH2 is still a mater of literature research...

Attachment: benzocyclobutanes.zip (862kB)
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Nicodem - 24-10-2006 at 23:53

Quote:
Originally posted by Drunkguy
This is kinda related to the Diels Alder reaction? I have experience doing those. [I have an "Oxford Primer" book on pericyclic reactions but I dont use it at all. I will happily scan it if anyone wants an e-copy].

It bears some similarities with the Diels-Alder reaction, but it is mechanistically quite different. Diels-Alder reactions are [4+2] cycloadditions, initiated thermally while photocycloadditions are [2+2] and are not speeded up thermally. However the main difference is in the HOMO/LUMO interaction which is completely different. The Guidebook to Mechanism in Organic Chemistry (Sykes, 1986), (available as e-book) gives the very basics of the mechanisms of all pericyclic reactions. However, for more than just basics, you would need other sources – I don't know what is the book you have but scanned books are always welcomed here. ;)

Quote:
You can make the precursor between phthalimide and allyl bromide, right?

Yes. The preparation of N-allyl-phthalimide is trivial, hence the proposal of its use. It can also be prepared from allylamine and phthalanhydride.

Quote:
I read a little about 2 + 2 cycloadditions last night, you are absolutely right that the 4n + 2 rule means that UV light is necessary. However it also appears that this reaction must be done at sub-zero temperatures.

It is true that often they are being performed in dry ice/acetone bath temperature, but not always. For example, this particular 5,6-dichloro-cyclohexen-1,4-dion substrate is irradiated at 0°C. The cooling is needed also because of the heat caused by light absorption, thus to prevent any thermal side reaction.

Quote:
In the reaction mechanism you showed 4 curly arrows. Just wondering if hv mediated process is free radical or if that was a typo.

No, I don't think you can consider them as free radical processes. The reason I used double half-arrows is because photochemical reactions of Pi-bonds are generally considered as biradical interactions, though in reality this is probably another simplified view. Besides, I still have to learn more about photochemistry in general as I know not much more than what was thought in the school.

Drunkguy - 26-10-2006 at 01:00

Download link here:

http://www14.rapidupload.com/d.php?file=dl&filepath=6146

I have quite alot of these Oxford Primer books btw.

Nicodem - 26-10-2006 at 09:50

Thanks. I compiled all the GIF images into a PDF file to make it more practical: Pericyclic reactions (Fleming, 1998)

Drunkguy - 26-10-2006 at 11:11

That file still has some bugs in I need to weed out. I just wanted to see how much people want it before I take the extra effort.

Sandmeyer - 3-11-2006 at 07:33

Regarding the proposed aryne pathway, the problem is that when N-allylphtalimide is used, there is also a possibility of a proton abstraction from the allylic amide, giving a species which could instead add to the aryne:

http://img349.imageshack.us/my.php?image=schemeop1.jpg

Question is if LDA is powerful enough to do this, it works for 2,3-wittig rearrangement*...

Don't know what the problem is but sometimes I can't show images...

IMO the original idea from p-benzoquinone is better, although acrylonitrile can be used to overcome this problem, other potential problems arise...

*: http://www.chempensoftware.com/reactions/rxn576.htm

Edit: Drunkguy, that's a cool book, please fix the bugs and upload it again...

[Edited on 3-11-2006 by Sandmeyer]

Ullmann - 3-11-2006 at 19:39

Well, i would better said that the real problem with aryne pathway is side reactions between the base and the aryne in case of generation from bromo-DMBenzene. When the aryne is done from the anthranylic zwiterion there is no base needed and less side reactino are possible (and the yiled still suck to 20%). I think it may not work if another aryne generation pathway is used than from heating the zwitterion.

Also as nicodem pointed out, the acrylonitrile may add the base to its beta-carbon hence now i do not think it will work from bromo-DMB and acrylonitrile neither. Also i do not think with an allylic non-conjugated to an EWG group it will add with the aryne as acrylonitrile did.

Problem with benzoquinone is the photochemistry may be abit tricky, do not forget than pyrex absorb UV light. Alltough i have no experience with photochemistry at all i would like to know how to setup a good irradiation apparatus using a mercury HP lamp (solarium lamp)...

Drunkguy - 5-11-2006 at 00:33

This is the new DL link:

http://www14.rapidupload.com/d.php?file=dl&filepath=8065

It still has a few narrow page margins, but it is readible.

Drunkguy - 5-11-2006 at 06:40

I also uploaded a new book today.

The aryne mechanism is certainly valid with acylonitrile.

The small question remains as to how the hell one makes the appropriately functionalized aryne in the first place. Edit: My book covers some of these methods. E.g. Treatment of monochloro-1,4-dimethoxybenzene with BuLi should result in aryne formation.

[Edited on 5-11-2006 by Drunkguy]

Nicodem - 5-11-2006 at 06:54

Quote:
Originally posted by Drunkguy
The aryne mechanism is certainly valid with acylonitrile.

Are you saying this for the base formed aryne or the antranilic acid diazotation derived one? For the later we already know since that is how Nichols did it. What is of issue here is whether the acrylonitrile would "survive" the LDA or NaNH2 needed for the aryne preparation from 2-bromo-1,4-dimethoxybenzene. (acrylonitrile tends to polymerize in the presence of strong bases like amides through the anionic polymerization mechanism)
Quote:
Originally posted by Drunkguy
The small question remains as to how the hell one makes the appropriately functionalized aryne in the first place.

2-bromo-1,4-dimethoxybenzene is a piece of cake to prepare.

Drunkguy - 5-11-2006 at 07:15

Uh, a 20% yield is got in that reaction although they dont comment on how the aryne was generated. However, in the further reading section they allude to this journal article.

Also note that aryne generation can be accomplished by decomposition of diazonium salts -> aryl cation -> loss of proton = aryne.

More superpotent agonists from Prof. Nichols

Lego - 13-11-2006 at 10:21

Molecular interaction of serotonin 5 HT2A receptor residues Phe339(6.51) and Phe340(6.52) with super-potent N-benzyl phenethylamine agonists
Braden MR, Parrish JC, Naylor JC, Nichols DE
Mol. Pharmacol., 2006 http://dx.doi.org/10.1124/mol.106.028720

Abstract: Experiments were conducted to examine the molecular basis for the high affinity and potency of a new class of 5 HT2A receptor agonists, N-benzyl phenethylamines. Competition binding assays at several serotonin receptors confirmed that an N-arylmethyl substitution was necessary for affinity increases up to 300-fold over simple N-alkyl homologues, as well as enhanced selectivity for 5 HT2A vs. 5-HT2C and 5-HT1A receptors. PI hydrolysis functional assays confirmed that these N-benzyl phenethylamines are potent and highly efficacious agonists at the rat 5 HT2A receptor. Virtual docking of these compounds into a human 5 HT2A receptor homology model indicated that the N-benzyl moiety might be interacting with F339((6.51)), whereas the phenethylamine portion was likely interacting with F340((6.52)). Experiments in h5 HT2A receptors with F339((6.51))L and F340((6.52))L mutations appear to support this hypothesis. Dramatic detrimental effects on affinity, potency, and intrinsic activity were observed with the F339((6.51))L mutation for all N-benzyl analogues, whereas most N-unsubstituted phenethylamines and traditional agonists were only weakly affected, if at all. Consistent with other published studies, the F340((6.52))L mutation detrimentally affected affinity, potency, and intrinsic activity of nearly all compounds tested, although a strong change in intrinsic activity was not seen with most N-aryl analogues. These data further validate the topology of our h5 HT2A receptor homology model. Importantly, this study is the first to identify a hitherto unrecognized role for residue 6.51 in agonist activation of a serotonin GPCR, whereas most previous reports have suggested a varied and sometimes contradictory role in homologous GPCRs.


* Full details of chemical syntheses of all novel compounds and characterization of additional analogues will be described elsewhere
* By contrast, the N-benzyl group produced a profound increase in affinity (ca. 7- to 300-fold) and potency (ca. 100- to 200-fold) at the r5-HT2A receptor. Addition of a polar methoxy or hydroxy group at the 2-position of the benzyl group further increased affinities

Lego - 1-12-2006 at 13:04

C-(4,5,6-Trimethoxyindan-1-yl)methanamine: A Mescaline Analogue Designed Using a Homology Model of the 5-HT2A Receptor
Thomas H. McLean, James J. Chambers, Jason C. Parrish, Michael R. Braden, Danuta Marona-Lewicka, Deborah Kurrasch-Orbaugh, and David E. Nichols
J. Med. Chem., 2006, 49(14), 4269-4274
http://dx.doi.org/10.1021/jm060272y



Abstract: A conformationally restricted analogue of mescaline, C-(4,5,6-trimethoxyindan-1-yl)-methanamine, was designed using a 5-HT(2A) receptor homology model. The compound possessed 3-fold higher affinity and potency than and efficacy equal to that of mescaline at the 5-HT(2A) receptor. The new analogue substituted fully for LSD in drug discrimination studies and was 5-fold more potent than mescaline. Resolution of this analogue into its enantiomers corroborated the docking experiments, showing the R-(+) isomer to have higher affinity and potency and to have efficacy similar to that of mescaline at the 5-HT(2A) receptor.

Experimental: 4,5,6-Trimethoxy-3H-indene-1-carbonitrile, 4. To a solution of 4,5,6-trimethoxyindanone[18] 3 (1.0 g, 4.5 mmol) in CH2Cl2 (60 mL) under argon were added ZnI2 (40 mg) and trimethylsilyl cyanide (0.66 mL, 4.95 mmol). The mixture was heated at reflux for 5 h, and then the solvent was evaporated. The resulting oil was redissolved in 40 mL of benzene, 0.5 g of Amberlyst-15 cation exchange resin was added, and the flask was fitted with a Dean-Stark trap. The solution was heated at reflux for 3 h until no more water was collected. After filtration through diatomaceous earth to remove the resin, the benzene was evaporated, and the resulting residue was chromatographed on silica (EtOAc/hexanes, 1:1) to give 4 (0.71 g, 68%) as a yellow oil that solidified on standing: mp 95-97°C.

(±)-(2,3-Dihydro-4,5,6-trimethoxy-1H-inden-1-yl)aminomethane Hydrochloride, (±)-2. Unsaturated nitrile (±)-4 (1.40 g, 6.05 mmol) dissolved in absolute EtOH (250 mL) was placed in a 500 mL glass Parr hydrogenation flask containing 250 mg of 5% Pd/C and shaken for 20 min under 20 psi of H2. The solution was then filtered through diatomaceous earth to remove the catalyst and placed back into the hydrogenation flask along with 1 g of fresh activated Raney nickel 2800. Ammonia gas was bubbled through the solution for 1 min, and the flask was then shaken under 45 psi of H2 for 6 h. The catalyst was removed by filtration through diatomaceous earth, and the solvent was evaporated to yield a clear oil that was acidified with 1 N methanolic HCl and evaporated to yield (±)-2 hydrochloride (1.58 g, 96%) as a white solid. An analytical sample was recrystallized from 95% EtOH (4.8 g, 87%): mp 245°C

18. Safir, S. R. Sedative Indanones. U.S. Patent 3,454,565, October 5, 1966 (American Cyanamid, Co)
http://v3.espacenet.com/textdoc?DB=EPODOC&IDX=US3454565&...

[Edited on 1-12-2006 by Lego]

Attachment: J. Med. Chem., 2006, 49(14), 4269-4274.pdf (147kB)
This file has been downloaded 771 times


solo - 1-12-2006 at 15:54

Quote:
Originally posted by Lego
Molecular interaction of serotonin 5 HT2A receptor residues Phe339(6.51) and Phe340(6.52) with super-potent N-benzyl phenethylamine agonists
Braden MR, Parrish JC, Naylor JC, Nichols DE
Mol. Pharmacol., 2006 http://dx.doi.org/10.1124/mol.106.028720

Abstract: Experiments were conducted to examine the molecular basis for the high affinity and potency of a new class of 5 HT2A receptor agonists, N-benzyl phenethylamines. Competition binding assays at several serotonin receptors confirmed that an N-arylmethyl substitution was necessary for affinity increases up to 300-fold over simple N-alkyl homologues, as well as enhanced selectivity for 5 HT2A vs. 5-HT2C and 5-HT1A receptors. PI hydrolysis functional assays confirmed that these N-benzyl phenethylamines are potent and highly efficacious agonists at the rat 5 HT2A receptor. Virtual docking of these compounds into a human 5 HT2A receptor homology model indicated that the N-benzyl moiety might be interacting with F339((6.51)), whereas the phenethylamine portion was likely interacting with F340((6.52)). Experiments in h5 HT2A receptors with F339((6.51))L and F340((6.52))L mutations appear to support this hypothesis. Dramatic detrimental effects on affinity, potency, and intrinsic activity were observed with the F339((6.51))L mutation for all N-benzyl analogues, whereas most N-unsubstituted phenethylamines and traditional agonists were only weakly affected, if at all. Consistent with other published studies, the F340((6.52))L mutation detrimentally affected affinity, potency, and intrinsic activity of nearly all compounds tested, although a strong change in intrinsic activity was not seen with most N-aryl analogues. These data further validate the topology of our h5 HT2A receptor homology model. Importantly, this study is the first to identify a hitherto unrecognized role for residue 6.51 in agonist activation of a serotonin GPCR, whereas most previous reports have suggested a varied and sometimes contradictory role in homologous GPCRs.


* Full details of chemical syntheses of all novel compounds and characterization of additional analogues will be described elsewhere
* By contrast, the N-benzyl group produced a profound increase in affinity (ca. 7- to 300-fold) and potency (ca. 100- to 200-fold) at the r5-HT2A receptor. Addition of a polar methoxy or hydroxy group at the 2-position of the benzyl group further increased affinities


Attachment: Molecular Interaction of Serotonin 5-HT2A Receptor Residues Phe339 (6.51) and Phe340(6.52) with Superpotent N-Benzyl Phe (247kB)
This file has been downloaded 784 times


solo - 1-12-2006 at 17:45

Quote:
Originally posted by Drunkguy
However, in the further reading section they allude to this journal article.

.


HETARYNES
MANFRED G. REINECKE
Tetrahedron Vol. 38, No. 4, pp. 427,1982

http://mihd.net/m0fdt3


I. INTRODUCTION . . . . . . . . . . . . . , . . . . . . . .428
II. HISTORICAL PERSPECTIVE . . . . . . . . . . . . . . . . 428
III. SPECIAL PROBLEMS IN HETARYNE DETECTION . . . . . . 429
A. Cme Substitution
1. Normal substitution via arynes
2. Cine-substitution via transhalogenation (BCHD)
3. Cine- substitution via abnormal addiin-elimihtation (AEa)
4. Cine-substitution via addition-substitutiott-ehmination (A%)
5. Cine-substitution via addition-riag-openingcliminatian-ringclos~e (ANRORC tine)
6. Precautions
B. Cycloaddition
1. Dimerixation and trimerixation
2. Die&Alder reactions
3. Precautions

IV. SPECIAL PROBLEMS IN HETARYNE GENERATION . . . . . . . . 435

V. SURVEY OFHETARYNES. . . . , . . . . . . . . . . . . . . . . . . . .

A. Five-membered hetarynes
1. 2,3Didehydrobenxofuraa
2. Didehydrofurans
3. Didehydromaleic anhydride
4. 2,3-Didehydro-N-methylindole
5. Didehydropyrroles
6. Didehydromaleimide
7. Didehydrothiophenes
(a) Reactions which Rive typical aryne products by nonaryne mechanisms
(b) Reactions which failed to give aryne products
(c) Reactions which are speculated without evidence to give arynes
(d) Reactions which give aryne products probably via arynes
8. Didehydrothianapthenes
9. Didehydroselenophenes
10. Didehydroimidaxoles
11. Didehydropyraxoles
12. Didehydrothiaxole
13. Didehydroisothiaxoles
14. Didehydro-1,2,5-thiadiaxole
15. 1,2Didehydroazoles
16. Five-membered carbocyclic arynes
B. Six-membered hetarynes
1. 3,4Didehydrocoumarin
2. 3,4-Didehydropyridines
(a) Bidentate precursors
(b) Monodentate precursors
(c) Substituted 3,4didehydropyridines
3. 2,3-Didehydropyridii
(a) Bidentate precursors
(b) Monodentate precursors
4. Didehydfopyridixides
5. Other didehydropyridines
6. Didehydrodiies
(a) Didehydropyridazines
(b) Didehydropyrazines
(c) Didehydropyrimidines
7. Multicyclic didehydropyridines
(a) 3.CDidehydroquinolines
(b) 2,3_Didehydroquinolme
(c) 2,4-Didehydroquinoline
(d) Didehydroisoquinolines
(e) Didehydronaphthyridines
(f) Other bicyclic didehydropyridines
(g) Tricyclic Didehydropyridines
8. Multicyclic Didehydrodiazines
9. Didehydroborazine
C. Seven-membered hetarynes
D. Benzdidehydroheterocycles

Acknowledgement

VI. REFERENCES . . . . .

[Edited on 2-12-2006 by solo]

Benzylation really helps

Panoramix - 8-8-2007 at 10:42

Influence of amine substituents on 5-HT2A versus 5-HT2C binding of phenylalkyl- and indolylalkylamines
Glennon RA, Dukat M, el-Bermawy M, Law H, De los Angeles J, Teitler M, King A, Herrick-Davis K
J. Med. Chem, 1994, 37(13), 1929-1935

Abstract: The effect of 15 different amine substituents on 5-HT2A and 5-HT2C serotonin receptor binding was investigated for two series of compounds (i.e., phenylalkylamine and indolylalkylamine derivatives). In general, amine substitution decreases receptor affinity; however, N-(4-bromobenzyl) substitution results in compounds that bind at 5-HT2A receptors with high affinity (Ki < 1 nM) and with > 100-fold selectivity. Although parallel structural modification in the two series result in parallel shifts in 5-HT2C binding, these same modifications alter 5-HT2A binding in a less consistent manner.

One of the compounds, N-(4-bromobenzyl)-2CB, is 20 times more potent (Ki on 5-HT2A) than 2-CB

[Edited on by Panoramix]

Attachment: 4-Br-Benzyl-2CB.pdf (1MB)
This file has been downloaded 606 times


Sergei_Eisenstein - 8-8-2007 at 11:46

Perhaps, but I'd like to see how these N-benzylated substances are metabolized. It's well possible that the increased potency is nullified by a 100% debenzylation before any drug reaches a receptor.

*Aminomethylbenzocycloalkanes *

Methyl.Magic - 20-7-2010 at 07:32

Hello,

Sorry to dig up this old thread but I've just read it and i wonder if it can be possible to make the aminomethylbenzocycloalkane with bromo-p-dimethoxybenzene and acrolein dimethylacetal via aryne formation. What do you think about that ?



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